Bibliography of Author: Collado-Vides, J.

  1. Collado-Vides, J., Hofestadt, R., Mavrovouniotis, M.L., and Michal, G.. "Modeling and simulation of gene regulation and metabolic pathways." Biosystems. 49 (1). 1999. pp. 79-82.
    [ .pdf ] [ PubMed ]

    Keywords: *Gene Expression Regulation ; *Metabolism ; *Models Genetic


  2. Hofestadt, R., Mavrovouniotis, M.L., Collado-Vides, J., and Loffler, M.. "Modeling and simulation of metabolic pathways, gene regulation and cell differentiation. October 22-27, 1995. International Conference and Research Center for Computer Science, Schloss Dagstuhl, Saarland, Germany." Bioessays. 18 (4). 1996. pp. 333-5.
    [ PubMed ]

    Keywords: Cell Differentiation ; *Computer Simulation ; Gene Expression Regulation ; Information Systems ; Metabolism ; *Models Biological


  3. Karp, P.D., Riley, M., Saier, M., Paulsen, I.T., Collado-Vides, J., Paley, S.M., Pellegrini-Toole, A., Bonavides, C., and Gama-Castro, S.. "The EcoCyc Database." Nucleic Acids Res. 30 (1). 2002. pp. 56-8.
    [ .pdf ] [ PubMed ]

    EcoCyc is an organism-specific pathway/genome database that describes the metabolic and signal-transduction pathways of Escherichia coli, its enzymes, its transport proteins and its mechanisms of transcriptional control of gene expression. EcoCyc is queried using the Pathway Tools graphical user interface, which provides a wide variety of query operations and visualization tools. EcoCyc is available at http://ecocyc.org/.

    Keywords: Database Management Systems ; *Databases Genetic ; Escherichia coli_*genetics ; Escherichia coli_*metabolism ; Escherichia coli Proteins_*genetics ; Escherichia coli Proteins_*physiology ; Gene Expression Regulation Bacterial ; *Genome Bacterial ; Information Storage and Retrieval ; Internet ; Protein Transport ; Signal Transduction